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Crystal Structure Of Aldose Reductase (AKR1B1) Complexed With NADP+ And Two AT-001
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 25%PEG 3,350, 100 mM Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.71 54.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.485 α = 90 b = 95.485 β = 90 c = 73.857 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.12709 SSRL BL9-2
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 36.93 99.8 0.078 0.087 0.037 15.9 5.3 27908
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 99 0.407 0.467 0.225 3.3 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.952 33.719 27809 889 99.574 0.168 0.1669 0.1751 0.2056 0.2208 0.05 22.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.082 r_dihedral_angle_3_deg 14.884 r_dihedral_angle_1_deg 6.123 r_lrange_it 5.918 r_lrange_other 5.865 r_dihedral_angle_2_deg 5.329 r_scangle_it 4.763 r_scangle_other 4.762 r_scbond_it 3.092 r_scbond_other 3.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.082 r_dihedral_angle_3_deg 14.884 r_dihedral_angle_1_deg 6.123 r_lrange_it 5.918 r_lrange_other 5.865 r_dihedral_angle_2_deg 5.329 r_scangle_it 4.763 r_scangle_other 4.762 r_scbond_it 3.092 r_scbond_other 3.091 r_mcangle_it 2.497 r_mcangle_other 2.496 r_mcbond_it 1.855 r_mcbond_other 1.855 r_angle_refined_deg 1.512 r_dihedral_angle_other_2_deg 0.57 r_angle_other_deg 0.481 r_nbd_refined 0.222 r_nbd_other 0.218 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.192 r_xyhbond_nbd_refined 0.15 r_symmetry_xyhbond_nbd_refined 0.134 r_symmetry_nbd_refined 0.09 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.069 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2518 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing