8FH6 | pdb_00008fh6

Crystal Structure Of Aldose Reductase (AKR1B1) Complexed With NADP+ And Two AT-001

X-RAY DIFFRACTION

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Serial Crystallography (SX)

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.5	298	25%PEG 3,350, 100 mM Bis-Tris

Crystal Properties
Matthews coefficient	Solvent content
2.71	54.55

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 95.485	α = 90
b = 95.485	β = 90
c = 73.857	γ = 120

Symmetry
Space Group	P 61

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2012-12-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL9-2	1.12709	SSRL	BL9-2

Serial Crystallography

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		fixed target

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	36.93	99.8	0.078	0.087	0.037	15.9	5.3		27908

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	2.06	99		0.407	0.467	0.225	3.3	4.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.952	33.719	27809	889	99.574	0.168	0.1669	0.18	0.2056	0.22	0.05	22.923

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
					-0.001

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.082
r_dihedral_angle_3_deg	14.884
r_dihedral_angle_1_deg	6.123
r_lrange_it	5.918
r_lrange_other	5.865
r_dihedral_angle_2_deg	5.329
r_scangle_it	4.763
r_scangle_other	4.762
r_scbond_it	3.092
r_scbond_other	3.091
r_mcangle_it	2.497
r_mcangle_other	2.496
r_mcbond_it	1.855
r_mcbond_other	1.855
r_angle_refined_deg	1.512
r_dihedral_angle_other_2_deg	0.57
r_angle_other_deg	0.481
r_nbd_refined	0.222
r_nbd_other	0.218
r_symmetry_nbd_other	0.193
r_nbtor_refined	0.192
r_xyhbond_nbd_refined	0.15
r_symmetry_xyhbond_nbd_refined	0.134
r_symmetry_nbd_refined	0.09
r_symmetry_nbtor_other	0.082
r_chiral_restr	0.069
r_gen_planes_refined	0.009
r_bond_refined_d	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2518
Nucleic Acid Atoms
Solvent Atoms	220
Heterogen Atoms	118

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing