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Crystal Structure of EGFR LRTM with compound 24
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4I22
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 285 0.1 M sodium acetate pH 5.3, 0.2 M potassium acetate, 3% PEG 8000.
Crystal Properties Matthews coefficient Solvent content 2.14 42.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.535 α = 104.19 b = 50.316 β = 101.73 c = 85.875 γ = 90.12
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS 6M-F 2018-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9159 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 48.7 98 0.08 10.8 3.5 25531
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.39 2.43 96.9 0.63 2.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4i22 2.4 30 23969 1260 97.87 0.1613 0.156 0.1686 0.26 0.2596 RANDOM 61.506
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.38 -0.35 -0.2 0.77 -0.46 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.934 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_3_deg 15.521 r_dihedral_angle_1_deg 6.389 r_angle_refined_deg 1.36 r_angle_other_deg 1.169 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.934 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_3_deg 15.521 r_dihedral_angle_1_deg 6.389 r_angle_refined_deg 1.36 r_angle_other_deg 1.169 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5025 Nucleic Acid Atoms Solvent Atoms 609 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling PHASER phasing