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BRD4 in complex with 2-(2-(4-(3,5-dimethylisoxazol-4-yl)-1H-pyrazol-1-yl)acetamido)-N-ethylpropanamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model 5LRQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1 M Buffer system 3 (1 M Tris, 1 M BICINE, pH 8.5), 34-44% Precipitant Solution 3 (20% PEG 4000, 40%) and 60-80 mM Halogens Mix (NaF, NaBr and NaI) solution
Crystal Properties Matthews coefficient Solvent content 2.13 42.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.144 α = 90 b = 43.237 β = 90 c = 79.276 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2022-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 18.023 99.8 0.076 0.992 8.3 6.3 12689
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.5 0.856 0.54 1.4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5LRQ 1.8 18.023 12646 645 99.677 0.197 0.1948 0.1948 0.2341 0.2341 13.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.655 0.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.4 r_dihedral_angle_3_deg 15.151 r_dihedral_angle_2_deg 12.096 r_dihedral_angle_1_deg 6.212 r_lrange_it 5.572 r_lrange_other 5.556 r_scangle_it 2.818 r_scangle_other 2.817 r_scbond_it 1.902 r_scbond_other 1.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.4 r_dihedral_angle_3_deg 15.151 r_dihedral_angle_2_deg 12.096 r_dihedral_angle_1_deg 6.212 r_lrange_it 5.572 r_lrange_other 5.556 r_scangle_it 2.818 r_scangle_other 2.817 r_scbond_it 1.902 r_scbond_other 1.901 r_mcangle_other 1.727 r_mcangle_it 1.722 r_angle_refined_deg 1.55 r_mcbond_it 1.08 r_mcbond_other 1.079 r_angle_other_deg 0.772 r_symmetry_nbd_refined 0.296 r_nbd_other 0.288 r_nbd_refined 0.247 r_symmetry_nbd_other 0.208 r_nbtor_refined 0.189 r_xyhbond_nbd_refined 0.157 r_symmetry_xyhbond_nbd_refined 0.143 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.074 r_gen_planes_other 0.012 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1081 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data reduction Aimless data scaling PHASER phasing