8BVD

FimH lectin domain in complex with mannose C-linked to quinoline

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	293.15	3.0M NaCl and 0.1M BIS-TRIS at pH=5.5

Crystal Properties
Matthews coefficient	Solvent content
5.53	77.75

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 151.784	α = 90
b = 151.784	β = 90
c = 225.034	γ = 120

Symmetry
Space Group	P 61 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2019-09-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 1	0.978565	SOLEIL	PROXIMA 1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.995	49.732	98.6	0.464	0.996	12.41	39.4		31057

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3	3.18	98.3		3.422	0.615	1.37	40.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.995	49.732	28931	1439	91.874	0.254	0.2512	0.3034	RANDOM	53.611

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.117	-0.059		-0.117		0.381

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	17.291
r_dihedral_angle_6_deg	16.377
r_dihedral_angle_2_deg	15.735
r_lrange_it	11.972
r_lrange_other	11.971
r_dihedral_angle_1_deg	8.665
r_mcangle_it	8.352
r_mcangle_other	8.35
r_scangle_it	7.264
r_scangle_other	7.264
r_mcbond_it	5.497
r_mcbond_other	5.494
r_scbond_it	4.698
r_scbond_other	4.697
r_angle_refined_deg	1.387
r_angle_other_deg	0.506
r_nbd_other	0.251
r_xyhbond_nbd_refined	0.227
r_symmetry_nbd_other	0.206
r_symmetry_xyhbond_nbd_refined	0.2
r_nbd_refined	0.191
r_nbtor_refined	0.178
r_ncsr_local_group_5	0.15
r_ncsr_local_group_1	0.145
r_ncsr_local_group_4	0.14
r_ncsr_local_group_2	0.138
r_ncsr_local_group_6	0.122
r_ncsr_local_group_3	0.119
r_symmetry_nbd_refined	0.118
r_symmetry_xyhbond_nbd_other	0.091
r_symmetry_nbtor_other	0.088
r_chiral_restr	0.058
r_bond_other_d	0.01
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4784
Nucleic Acid Atoms
Solvent Atoms	224
Heterogen Atoms	96

Software

Software
Software Name	Purpose
REFMAC	refinement
XSCALE	data scaling
XDS	data reduction
PHASER	phasing