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COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR Asundexian
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other in house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M Citrate pH 4.5, 20-30% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.18 43.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.194 α = 90 b = 59.916 β = 90 c = 66.816 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2018-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 44.61 98.3 0.082 0.046 0.997 13.2 2.8 20404
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.92 0.574 0.363 0.723 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in house model 1.841 44.608 20366 960 97.679 0.171 0.1696 0.1796 0.2078 0.2109 25.491
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.986 -0.796 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.294 r_dihedral_angle_4_deg 21.385 r_dihedral_angle_3_deg 12.918 r_dihedral_angle_1_deg 7.495 r_lrange_it 4.872 r_lrange_other 4.826 r_scangle_it 3.092 r_scangle_other 3.091 r_scbond_it 1.941 r_mcangle_it 1.931
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.294 r_dihedral_angle_4_deg 21.385 r_dihedral_angle_3_deg 12.918 r_dihedral_angle_1_deg 7.495 r_lrange_it 4.872 r_lrange_other 4.826 r_scangle_it 3.092 r_scangle_other 3.091 r_scbond_it 1.941 r_mcangle_it 1.931 r_mcangle_other 1.93 r_scbond_other 1.912 r_angle_refined_deg 1.857 r_angle_other_deg 1.47 r_mcbond_it 1.33 r_mcbond_other 1.28 r_symmetry_nbd_refined 0.305 r_nbd_other 0.201 r_nbd_refined 0.192 r_symmetry_nbd_other 0.186 r_symmetry_xyhbond_nbd_refined 0.182 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.167 r_symmetry_xyhbond_nbd_other 0.092 r_chiral_restr 0.088 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing