8BO3

COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR Asundexian


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.1M Citrate pH 4.5, 20-30% PEG4000
Crystal Properties
Matthews coefficientSolvent content
2.1843.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.194α = 90
b = 59.916β = 90
c = 66.816γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2018-11-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8444.6198.30.0820.0460.99713.22.820404
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.841.920.5740.3630.7231.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTin house model1.84144.6082036696097.6790.1710.16960.207825.491
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.986-0.796-0.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.294
r_dihedral_angle_4_deg21.385
r_dihedral_angle_3_deg12.918
r_dihedral_angle_1_deg7.495
r_lrange_it4.872
r_lrange_other4.826
r_scangle_it3.092
r_scangle_other3.091
r_scbond_it1.941
r_mcangle_it1.931
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.294
r_dihedral_angle_4_deg21.385
r_dihedral_angle_3_deg12.918
r_dihedral_angle_1_deg7.495
r_lrange_it4.872
r_lrange_other4.826
r_scangle_it3.092
r_scangle_other3.091
r_scbond_it1.941
r_mcangle_it1.931
r_mcangle_other1.93
r_scbond_other1.912
r_angle_refined_deg1.857
r_angle_other_deg1.47
r_mcbond_it1.33
r_mcbond_other1.28
r_symmetry_nbd_refined0.305
r_nbd_other0.201
r_nbd_refined0.192
r_symmetry_nbd_other0.186
r_symmetry_xyhbond_nbd_refined0.182
r_nbtor_refined0.178
r_xyhbond_nbd_refined0.167
r_symmetry_xyhbond_nbd_other0.092
r_chiral_restr0.088
r_symmetry_nbtor_other0.081
r_bond_refined_d0.015
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1875
Nucleic Acid Atoms
Solvent Atoms166
Heterogen Atoms54

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing