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S148F mutant of blue-to-red fluorescent timer mRubyFT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7QGK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 288 250 mM MgCl2; 100 mM HEPES 20% PEG 3350, pH 7,5
Crystal Properties Matthews coefficient Solvent content 1.87 34.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.524 α = 90 b = 66.465 β = 90 c = 96.488 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2022-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON KURCHATOV SNC BEAMLINE K4.4 0.79373 KURCHATOV SNC K4.4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 31.42 99.7 0.127 0.143 0.064 0.995 7 4.9 30195
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 100 0.95 1.059 0.46 0.501 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7QGK 1.6 31.42 26111 1350 99.52 0.195 0.1936 0.2035 0.2203 0.23 RANDOM 16.126
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.82 1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.562 r_dihedral_angle_3_deg 14.896 r_dihedral_angle_1_deg 8.444 r_angle_refined_deg 1.914 r_angle_other_deg 0.928 r_chiral_restr 0.104 r_gen_planes_refined 0.012 r_bond_refined_d 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1720 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms
Software Software Software Name Purpose XDS data reduction Aimless data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction