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Thaumatin, 9-11 fs FEL pulses as determined by XTCAV
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FGT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 7 293 0.8 M NA, K TARTRATE, 0.1 M NA HEPES
PH 7.0, BATCH MODE, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.87 57.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.25 α = 90 b = 58.25 β = 90 c = 150.6 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL CS-PAD CXI-1 2016-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SLAC LCLS BEAMLINE CXI 1.338 SLAC LCLS CXI
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 injection
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 23.12 100 0.955 0.219 3.5 1 21989
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.93 100 0.426 0.97 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 5FGT 1.88 22.67 21918 1022 90.939 0.174 0.1727 0.1822 0.2038 0.2139 24.826
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.251 0.251 -0.502
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.911 r_dihedral_angle_1_deg 20.12 r_dihedral_angle_4_deg 16.587 r_dihedral_angle_3_deg 13.825 r_dihedral_angle_other_3_deg 7.723 r_lrange_it 6.994 r_lrange_other 6.806 r_scangle_other 5.211 r_scangle_it 5.209 r_scbond_other 3.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.911 r_dihedral_angle_1_deg 20.12 r_dihedral_angle_4_deg 16.587 r_dihedral_angle_3_deg 13.825 r_dihedral_angle_other_3_deg 7.723 r_lrange_it 6.994 r_lrange_other 6.806 r_scangle_other 5.211 r_scangle_it 5.209 r_scbond_other 3.36 r_scbond_it 3.355 r_mcangle_it 2.959 r_mcangle_other 2.958 r_mcbond_it 2.009 r_mcbond_other 1.932 r_angle_refined_deg 1.659 r_angle_other_deg 1.42 r_symmetry_nbd_refined 0.215 r_nbd_other 0.208 r_xyhbond_nbd_refined 0.197 r_nbd_refined 0.196 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.175 r_symmetry_xyhbond_nbd_refined 0.166 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1550 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling REFMAC phasing