8A9F | pdb_00008a9f

Thaumatin, 9-11 fs FEL pulses as determined by XTCAV

X-RAY DIFFRACTION

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Serial Crystallography (SX)

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5FGT

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	7	293	0.8 M NA, K TARTRATE, 0.1 M NA HEPES PH 7.0, BATCH MODE, TEMPERATURE 293K

Crystal Properties
Matthews coefficient	Solvent content
2.87	57.2

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.25	α = 90
b = 58.25	β = 90
c = 150.6	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	CS-PAD CXI-1		2016-04-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SLAC LCLS BEAMLINE CXI	1.338	SLAC LCLS	CXI

Serial Crystallography

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.88	23.12	100	0.955	0.219	3.5	1		21989

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.88	1.93		100	0.426	0.97	1.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	5FGT	1.88	22.67	21918	1022	90.939	0.174	0.1727	0.18	0.2038	0.21	24.826

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.251			0.251		-0.502

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.911
r_dihedral_angle_1_deg	20.12
r_dihedral_angle_4_deg	16.587
r_dihedral_angle_3_deg	13.825
r_dihedral_angle_other_3_deg	7.723
r_lrange_it	6.994
r_lrange_other	6.806
r_scangle_other	5.211
r_scangle_it	5.209
r_scbond_other	3.36
r_scbond_it	3.355
r_mcangle_it	2.959
r_mcangle_other	2.958
r_mcbond_it	2.009
r_mcbond_other	1.932
r_angle_refined_deg	1.659
r_angle_other_deg	1.42
r_symmetry_nbd_refined	0.215
r_nbd_other	0.208
r_xyhbond_nbd_refined	0.197
r_nbd_refined	0.196
r_symmetry_nbd_other	0.185
r_nbtor_refined	0.175
r_symmetry_xyhbond_nbd_refined	0.166
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.068
r_bond_refined_d	0.012
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1550
Nucleic Acid Atoms
Solvent Atoms	132
Heterogen Atoms	10

Software

Software
Software Name	Purpose
REFMAC	refinement
CrystFEL	data reduction
CrystFEL	data scaling
REFMAC	phasing