8A65

Small molecule stabilizer (compound 3) for FOXO1 and 14-3-3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES pH 7.3, 0.19 M CaCl2, 5% glycerol, 25% PEG 400
Crystal Properties
Matthews coefficientSolvent content
2.652.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.879α = 90
b = 112.144β = 90
c = 62.632γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-11-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.033220PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.645.47100155.713.5518652
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.630.997

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4JC31.645.4736420195499.910.168030.166680.1929RANDOM18.161
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.01-0.3-0.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.142
r_dihedral_angle_4_deg17.375
r_dihedral_angle_3_deg11.809
r_long_range_B_refined6.058
r_long_range_B_other5.818
r_dihedral_angle_1_deg5.086
r_scangle_other3.697
r_scbond_it2.465
r_scbond_other2.464
r_mcangle_it2.267
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.142
r_dihedral_angle_4_deg17.375
r_dihedral_angle_3_deg11.809
r_long_range_B_refined6.058
r_long_range_B_other5.818
r_dihedral_angle_1_deg5.086
r_scangle_other3.697
r_scbond_it2.465
r_scbond_other2.464
r_mcangle_it2.267
r_mcangle_other2.267
r_angle_refined_deg1.588
r_mcbond_it1.368
r_mcbond_other1.367
r_angle_other_deg1.298
r_chiral_restr0.098
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1931
Nucleic Acid Atoms
Solvent Atoms313
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
Aimlessdata scaling
MOLREPphasing