☰ Navigation Tabs
Small molecule stabilizer (compound 3) for FOXO1 and 14-3-3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH 7.3,
0.19 M CaCl2, 5% glycerol, 25% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.6 52.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.879 α = 90 b = 112.144 β = 90 c = 62.632 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033220 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.47 100 1 55.7 13.5 518652
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 0.997
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.6 45.47 36420 1954 99.91 0.16803 0.16668 0.1929 0.2163 RANDOM 18.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 -0.3 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.142 r_dihedral_angle_4_deg 17.375 r_dihedral_angle_3_deg 11.809 r_long_range_B_refined 6.058 r_long_range_B_other 5.818 r_dihedral_angle_1_deg 5.086 r_scangle_other 3.697 r_scbond_it 2.465 r_scbond_other 2.464 r_mcangle_it 2.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.142 r_dihedral_angle_4_deg 17.375 r_dihedral_angle_3_deg 11.809 r_long_range_B_refined 6.058 r_long_range_B_other 5.818 r_dihedral_angle_1_deg 5.086 r_scangle_other 3.697 r_scbond_it 2.465 r_scbond_other 2.464 r_mcangle_it 2.267 r_mcangle_other 2.267 r_angle_refined_deg 1.588 r_mcbond_it 1.368 r_mcbond_other 1.367 r_angle_other_deg 1.298 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1931 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction Aimless data scaling MOLREP phasing