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TRIM7 PRYSPRY in complex with a MNV1-NS6 peptide LEALEFQ
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OW2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 291.15 1 M Sodium Potassium Phosphate pH 5
Crystal Properties Matthews coefficient Solvent content 2.82 56.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.919 α = 90 b = 112.972 β = 102.928 c = 53.036 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER2 XE 16M 2022-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.918 112.97 99.9 0.96 24.4 3.5 10246
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.92 3.1 0.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7OW2 2.918 56.55 10224 524 99.873 0.197 0.1931 0.1937 0.2746 0.2761 54.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.679 -2.008 1.848 2.491
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.156 r_dihedral_angle_4_deg 20.859 r_dihedral_angle_3_deg 19.318 r_lrange_it 9.702 r_lrange_other 9.701 r_dihedral_angle_1_deg 8.98 r_scangle_it 6.571 r_scangle_other 6.547 r_mcangle_it 5.992 r_mcangle_other 5.991
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.156 r_dihedral_angle_4_deg 20.859 r_dihedral_angle_3_deg 19.318 r_lrange_it 9.702 r_lrange_other 9.701 r_dihedral_angle_1_deg 8.98 r_scangle_it 6.571 r_scangle_other 6.547 r_mcangle_it 5.992 r_mcangle_other 5.991 r_scbond_it 4.127 r_scbond_other 4.077 r_mcbond_it 3.661 r_mcbond_other 3.661 r_angle_refined_deg 1.537 r_angle_other_deg 1.166 r_nbd_other 0.236 r_symmetry_nbd_refined 0.211 r_symmetry_nbd_other 0.197 r_nbd_refined 0.185 r_nbtor_refined 0.165 r_xyhbond_nbd_refined 0.144 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.055 r_symmetry_xyhbond_nbd_refined 0.055 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2809 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing