Experiment: 8ZPU

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	8JOW

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293.15	0.2 M Ammonium sulfate, 30% Polyethylene glycol 4000, 20 mM Tris HCl, 20 mM NaCl, pH 8.0

Crystal Properties
Matthews coefficient	Solvent content
3.37	63.49

Symmetry
Space Group	P 32 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r		2017-05-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1.0000	Photon Factory	BL-5A

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.8	21.1	99.8	0.176	0.055	0.996	12.8	11.1		19037

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.8	2.95			1.03	0.321	0.807	2.6

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.8	21.1	19017	1971	99.691	0.309	0.3044	0.3067	0.3452	0.3469	44.864

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.24	-0.12		-0.24		0.778

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.371
r_dihedral_angle_6_deg	12.467
r_dihedral_angle_2_deg	10.979
r_dihedral_angle_1_deg	7.456
r_lrange_it	5.635
r_lrange_other	5.635
r_scangle_it	3.344
r_scangle_other	3.264
r_mcangle_it	3.171
r_mcangle_other	3.171

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.371
r_dihedral_angle_6_deg	12.467
r_dihedral_angle_2_deg	10.979
r_dihedral_angle_1_deg	7.456
r_lrange_it	5.635
r_lrange_other	5.635
r_scangle_it	3.344
r_scangle_other	3.264
r_mcangle_it	3.171
r_mcangle_other	3.171
r_scbond_it	2.092
r_scbond_other	1.976
r_mcbond_it	1.919
r_mcbond_other	1.918
r_angle_refined_deg	1.371
r_angle_other_deg	0.491
r_nbd_other	0.241
r_symmetry_nbd_other	0.207
r_nbd_refined	0.186
r_nbtor_refined	0.18
r_symmetry_nbd_refined	0.174
r_symmetry_xyhbond_nbd_refined	0.158
r_xyhbond_nbd_refined	0.157
r_symmetry_xyhbond_nbd_other	0.119
r_symmetry_nbtor_other	0.086
r_ncsr_local_group_1	0.085
r_chiral_restr	0.064
r_bond_refined_d	0.005
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3602
Nucleic Acid Atoms
Solvent Atoms	14
Heterogen Atoms	32

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8ZPU | pdb_00008zpu