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The Crystal Structure of the ROCK1 from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5WNF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MgAC2, 0.1M NaAC pH4.5, 8% PEG 8000, 1.0M NDSB-256
Crystal Properties Matthews coefficient Solvent content 4.65 73.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.283 α = 90 b = 166.283 β = 90 c = 64.503 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2023-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.979183 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 48.73 91.4 0.235 11.9 15.2 9205
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.7 4.05 0.917
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.7 46.161 9180 444 90.64 0.211 0.2082 0.216 0.2595 0.2694 127.764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.134 -5.134 10.268
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.04 r_lrange_it 10.544 r_lrange_other 10.543 r_dihedral_angle_6_deg 9.029 r_mcangle_it 6.522 r_mcangle_other 6.52 r_scangle_it 6.225 r_scangle_other 6.224 r_dihedral_angle_1_deg 5.534 r_mcbond_it 3.713
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.04 r_lrange_it 10.544 r_lrange_other 10.543 r_dihedral_angle_6_deg 9.029 r_mcangle_it 6.522 r_mcangle_other 6.52 r_scangle_it 6.225 r_scangle_other 6.224 r_dihedral_angle_1_deg 5.534 r_mcbond_it 3.713 r_mcbond_other 3.713 r_scbond_it 3.445 r_scbond_other 3.444 r_dihedral_angle_2_deg 2.826 r_angle_refined_deg 0.79 r_angle_other_deg 0.293 r_nbd_refined 0.192 r_nbtor_refined 0.179 r_symmetry_nbd_other 0.176 r_nbd_other 0.154 r_xyhbond_nbd_refined 0.129 r_symmetry_xyhbond_nbd_refined 0.128 r_symmetry_nbd_refined 0.109 r_symmetry_nbtor_other 0.071 r_chiral_restr 0.036 r_bond_refined_d 0.002 r_chiral_restr_other 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3142 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing