☰ Navigation Tabs
Benzbromarone interferes with the interaction between Hsp90 and Aha1 by interacting with both of them
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M MIB pH 7.0,
25% PEG1500
Crystal Properties Matthews coefficient Solvent content 2.02 39.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.2 α = 90 b = 66.34 β = 90 c = 68.27 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER2 S 9M 2022-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.979145 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 42.45 97.92 0.998 17.71 2 19683
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.554 0.955
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 42.45 18688 995 97.95 0.18062 0.17853 0.1895 0.21848 0.2259 RANDOM 16.471
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.88 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.702 r_dihedral_angle_4_deg 26.04 r_dihedral_angle_3_deg 12.808 r_dihedral_angle_1_deg 6.496 r_long_range_B_refined 6.384 r_long_range_B_other 6.209 r_scangle_other 4.866 r_scbond_it 3.152 r_scbond_other 3.149 r_mcangle_other 2.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.702 r_dihedral_angle_4_deg 26.04 r_dihedral_angle_3_deg 12.808 r_dihedral_angle_1_deg 6.496 r_long_range_B_refined 6.384 r_long_range_B_other 6.209 r_scangle_other 4.866 r_scbond_it 3.152 r_scbond_other 3.149 r_mcangle_other 2.318 r_mcangle_it 2.317 r_angle_refined_deg 1.736 r_mcbond_it 1.586 r_mcbond_other 1.559 r_angle_other_deg 1.518 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1070 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data scaling xia2 data reduction MOLREP phasing