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Structure and dynamics of Drk-SH2 domain and its site-specific interaction with Sev
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 13C-seperated NOESY 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 2 15N-seperated NOESY 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 3 2D 1H-15N HSQC 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 4 3D HNCO 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 5 3D HN(CA)CO 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 6 3D HNCA 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 7 3D HN(CO)CA 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 8 3D CBCA(CO)NH 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 9 3D CBCANH 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 10 3D CC(CO)NH 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 11 3D H(CCO)NH 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 12 2D 1H-13C HSQC 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 13 3D HBHA(CO)NH 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 15 3D HN(CO)CA 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 14 3D HN(CA)CO 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600 16 3D HCCH-TOCSY 300 uM [U-10% 13C; U-100% 15N] SH2 domain of Drk adaptor protein 90% H2O/10% D2O 200 mM 7.4 AMBIENT atm 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 2 processing Azara 2.8 Boucher 1 chemical shift assignment CcpNmr Analysis 2.5.1 CCPN 3 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 4 collection TopSpin Bruker Biospin 5 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman