☰ Navigation Tabs
NADPH complex of Imine Reductase Mutant(M6) from Pochonia chlamydosporia 170
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291.15 PEG3350, magnesium chloride, Tris-Hcl pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.398 α = 90 b = 117.95 β = 100.89 c = 63.529 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2023-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34138
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 35.09 98.4 0.0638 13.36 3.99 36140
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 84.2 0.1661 2.08 2.08
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 35.09 29740 1596 99.35 0.17061 0.16687 0.1753 0.2414 0.2475 RANDOM 22.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 -0.41 0.33 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.845 r_dihedral_angle_3_deg 15.556 r_dihedral_angle_4_deg 13.943 r_dihedral_angle_1_deg 6.042 r_long_range_B_refined 5.084 r_long_range_B_other 5.009 r_scangle_other 3.326 r_mcangle_it 2.306 r_mcangle_other 2.305 r_scbond_it 2.192
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.845 r_dihedral_angle_3_deg 15.556 r_dihedral_angle_4_deg 13.943 r_dihedral_angle_1_deg 6.042 r_long_range_B_refined 5.084 r_long_range_B_other 5.009 r_scangle_other 3.326 r_mcangle_it 2.306 r_mcangle_other 2.305 r_scbond_it 2.192 r_scbond_other 2.192 r_angle_refined_deg 1.58 r_mcbond_other 1.526 r_mcbond_it 1.525 r_angle_other_deg 1.327 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4223 Nucleic Acid Atoms Solvent Atoms 455 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement SAINT data scaling SAINT data reduction PHASER phasing