8YUM | pdb_00008yum

Ubiquitin(late folding intermediate, F') from Oryza sativa subsp. japonica (Rice)

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
2	2D 1H-15N HSQC	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
3	3D CBCA(CO)NH	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
4	3D HNCACB	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
5	3D HNCO	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
6	3D HN(CA)CO	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
7	3D C(CO)NH	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
8	3D H(CCO)NH	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
9	3D HNHA	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
10	3D 1H-15N NOESY	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
11	3D 1H-13C NOESY	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
12	2D 1H-15N IPAP HSQC	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
13	2D 1H-15N IPAP HSQC	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
14	3D HNCO LRA	1 mM [U-13C; U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
15	3D 1H-15N TOCSY	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
16	T1 relaxation	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
17	T1 relaxation	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
18	T1rho relaxation	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
19	T1rho relaxation	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700
20	1H-15N heteronoe	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Agilent Direct Drive 600
21	1H-15N heteronoe	1 mM [U-15N] Ubiquitin	90% H2O/10% D2O	20 mM	2	1 atm	298	Bruker AVANCE 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700
2	Agilent	Direct Drive	600

NMR Refinement
Method	Details	Software
simulated annealing		CYANA
water refinement		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	40
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CcpNmr Analysis	2.5.2	CCPN
2	structure calculation	CYANA	3.98.15	Guntert, Mumenthaler and Wuthrich
3	refinement	X-PLOR NIH	3.4	Schwieters, Kuszewski, Tjandra and Clore
4	processing	NMRPipe	10.9	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	data analysis	PINT	2.1.0	Markus Niklasson and Patrik Lundstrom
6	collection	VnmrJ	4.2	Varian
7	collection	TopSpin	4.0.9	Bruker Biospin