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Ubiquitin(late folding intermediate, F') from Oryza sativa subsp. japonica (Rice)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 2 2D 1H-15N HSQC 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 3 3D CBCA(CO)NH 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 4 3D HNCACB 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 5 3D HNCO 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 6 3D HN(CA)CO 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 7 3D C(CO)NH 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 8 3D H(CCO)NH 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 9 3D HNHA 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 10 3D 1H-15N NOESY 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 11 3D 1H-13C NOESY 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 12 2D 1H-15N IPAP HSQC 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 13 2D 1H-15N IPAP HSQC 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 14 3D HNCO LRA 1 mM [U-13C; U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 15 3D 1H-15N TOCSY 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 16 T1 relaxation 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 17 T1 relaxation 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 18 T1rho relaxation 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 19 T1rho relaxation 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700 20 1H-15N heteronoe 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Agilent Direct Drive 600 21 1H-15N heteronoe 1 mM [U-15N] Ubiquitin 90% H2O/10% D2O 20 mM 2 1 atm 298 Bruker AVANCE 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700 2 Agilent Direct Drive 600
NMR Refinement Method Details Software simulated annealing CYANA water refinement X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CcpNmr Analysis 2.5.2 CCPN 2 structure calculation CYANA 3.98.15 Guntert, Mumenthaler and Wuthrich 3 refinement X-PLOR NIH 3.4 Schwieters, Kuszewski, Tjandra and Clore 4 processing NMRPipe 10.9 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 data analysis PINT 2.1.0 Markus Niklasson and Patrik Lundstrom 6 collection VnmrJ 4.2 Varian 7 collection TopSpin 4.0.9 Bruker Biospin