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SARS-CoV-2 Delta Spike in complex with JL-8C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7V7V
Sample SARS-CoV-2 Delta Spike in complex with JL-8C
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 125930 Reported Resolution (Å) 3.27 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C3
Map-Model Fitting and Refinement Id 1 (8HHY) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 52.434
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3 CTF CORRECTION cryoSPARC 3 MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT cryoSPARC 3 FINAL EULER ASSIGNMENT cryoSPARC 3 CLASSIFICATION cryoSPARC 3 RECONSTRUCTION cryoSPARC 3 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1666663