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The Crystal Structure of Tgf-Beta Type I Receptor (Alk5) from Biortus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WOT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MgAC2, 0.1M MES pH6.5, 10% PEG10,000
Crystal Properties Matthews coefficient Solvent content 2.07 40.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.813 α = 90 b = 77.464 β = 90 c = 89.524 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2022-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 1.18067 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 44.76 100 0.999 18.3 6.4 50369
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.5 0.683
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.47 38.762 50302 2460 99.96 0.165 0.1634 0.1725 0.1932 0.2032 18.485
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.353 0.288 0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.231 r_dihedral_angle_4_deg 15.263 r_dihedral_angle_3_deg 10.322 r_dihedral_angle_1_deg 6.805 r_lrange_it 5.325 r_lrange_other 5.149 r_scangle_it 3.827 r_scangle_other 3.826 r_scbond_it 2.517 r_scbond_other 2.516
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.231 r_dihedral_angle_4_deg 15.263 r_dihedral_angle_3_deg 10.322 r_dihedral_angle_1_deg 6.805 r_lrange_it 5.325 r_lrange_other 5.149 r_scangle_it 3.827 r_scangle_other 3.826 r_scbond_it 2.517 r_scbond_other 2.516 r_mcangle_other 2.08 r_mcangle_it 2.078 r_angle_refined_deg 1.726 r_mcbond_it 1.554 r_mcbond_other 1.491 r_angle_other_deg 1.485 r_nbd_refined 0.22 r_nbd_other 0.216 r_xyhbond_nbd_refined 0.202 r_symmetry_nbd_refined 0.194 r_symmetry_nbd_other 0.18 r_symmetry_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.174 r_symmetry_xyhbond_nbd_other 0.125 r_chiral_restr 0.088 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2433 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing