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CRYSTAL STRUCTURE OF THE EST1 H274D MUTANT AT PH 4.2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WJ1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.2 293 12% PEG 3000, 200 MM NACL, 100 MM PHOSPHATE-CITRATE, PH 4.2, VAPOR DIFFUSION, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.2 42.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.096 α = 90 b = 71.817 β = 90 c = 137.017 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 IMAGE PLATE Bruker DIP-6040 2003-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 18.7 91.5 0.088 13.6 4.3 46275 18.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 78.6 0.234 4.6 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 18.7 43939 2334 90.5 0.156 0.155 0.1553 0.18 0.1817 RANDOM 16.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.261 r_dihedral_angle_4_deg 16.505 r_dihedral_angle_3_deg 11.82 r_dihedral_angle_1_deg 5.655 r_scangle_it 2.662 r_scbond_it 1.913 r_angle_refined_deg 1.314 r_mcangle_it 1.085 r_mcbond_it 0.914 r_angle_other_deg 0.781
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.261 r_dihedral_angle_4_deg 16.505 r_dihedral_angle_3_deg 11.82 r_dihedral_angle_1_deg 5.655 r_scangle_it 2.662 r_scbond_it 1.913 r_angle_refined_deg 1.314 r_mcangle_it 1.085 r_mcbond_it 0.914 r_angle_other_deg 0.781 r_symmetry_vdw_other 0.247 r_nbd_refined 0.221 r_nbtor_refined 0.19 r_nbd_other 0.181 r_symmetry_hbond_refined 0.181 r_mcbond_other 0.164 r_xyhbond_nbd_refined 0.142 r_symmetry_vdw_refined 0.134 r_chiral_restr 0.09 r_nbtor_other 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2338 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 20
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement