☰ Navigation Tabs
Crystal structure of Spiral2 microtubule-binding domain from Physcomitrella patens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M sodium citrate (pH 5.0), 0.2 M NaH2SO4, 50 mM guanidine hydrochloride and 1.4 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.46 64.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.826 α = 90 b = 95.646 β = 90 c = 150.018 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2021-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.97899 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 48.11 99.6 0.15 0.163 0.063 0.998 10 6.6 24426
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 1.593 0.673 0.693 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.799 48.095 21924 1107 99.909 0.218 0.2149 0.2764 0.2679 59.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.366 4.995 -3.628
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.995 r_dihedral_angle_6_deg 16.31 r_dihedral_angle_2_deg 16.162 r_lrange_it 13.867 r_lrange_other 13.866 r_scangle_it 10.762 r_scangle_other 10.76 r_mcangle_other 10.022 r_mcangle_it 10.02 r_dihedral_angle_1_deg 7.747
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.995 r_dihedral_angle_6_deg 16.31 r_dihedral_angle_2_deg 16.162 r_lrange_it 13.867 r_lrange_other 13.866 r_scangle_it 10.762 r_scangle_other 10.76 r_mcangle_other 10.022 r_mcangle_it 10.02 r_dihedral_angle_1_deg 7.747 r_scbond_it 7.148 r_scbond_other 7.146 r_mcbond_it 6.809 r_mcbond_other 6.809 r_angle_refined_deg 1.856 r_angle_other_deg 0.623 r_nbd_other 0.275 r_nbd_refined 0.25 r_symmetry_xyhbond_nbd_refined 0.238 r_symmetry_nbd_refined 0.23 r_xyhbond_nbd_refined 0.223 r_symmetry_nbd_other 0.215 r_nbtor_refined 0.184 r_ncsr_local_group_1 0.105 r_symmetry_xyhbond_nbd_other 0.096 r_chiral_restr 0.085 r_symmetry_nbtor_other 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4222 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction CRANK2 phasing