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TtCS, oxaloacetate, acetyl-CoA complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold A0A0S3QTD0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 333.15 0.1 M BIS-TRIS pH 6.5, 2.4 M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.45 49.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.49 α = 90 b = 131.76 β = 90 c = 207.24 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL10U2 0.9792 SSRF BL10U2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 30.15 99.9 0.319 0.349 0.139 0.983 5.9 11.7 127185
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.39 2.213 0.449 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.33 30.15 120779 6296 99.89 0.18941 0.18654 0.1941 0.245 0.2476 RANDOM 38.029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.18 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.641 r_dihedral_angle_2_deg 10.434 r_long_range_B_other 8.629 r_long_range_B_refined 8.619 r_dihedral_angle_1_deg 6.728 r_scangle_other 6.331 r_mcangle_other 4.993 r_mcangle_it 4.992 r_scbond_it 4.054 r_scbond_other 4.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.641 r_dihedral_angle_2_deg 10.434 r_long_range_B_other 8.629 r_long_range_B_refined 8.619 r_dihedral_angle_1_deg 6.728 r_scangle_other 6.331 r_mcangle_other 4.993 r_mcangle_it 4.992 r_scbond_it 4.054 r_scbond_other 4.054 r_mcbond_other 3.287 r_mcbond_it 3.284 r_angle_refined_deg 1.712 r_angle_other_deg 0.565 r_chiral_restr 0.078 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21435 Nucleic Acid Atoms Solvent Atoms 883 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing