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Crystal structure of measles virus fusion inhibitor MEK35GE complexed with F protein HR1 (HR1-42) (P2 space group)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SVF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 200 mM MgCl2, 25% (w/v) PEG 3350, 100 mM Tris (pH 8.5)
Crystal Properties Matthews coefficient Solvent content 2.19 43.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.397 α = 90 b = 35.573 β = 91.262 c = 123.262 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.000000 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.165 50 99 0.063 0.999 20.74 6.65 24545
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.165 2.3 96.6 0.514 0.951 3.77 6.34
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.165 48.605 24541 1246 98.956 0.207 0.2028 0.2092 0.2805 0.2842 49.786
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.049 -1.308 2.488 -5.474
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.172 r_dihedral_angle_3_deg 17.892 r_dihedral_angle_4_deg 14.048 r_lrange_other 10.279 r_lrange_it 10.275 r_scangle_it 8.59 r_scangle_other 8.588 r_mcangle_it 6.351 r_mcangle_other 6.347 r_scbond_it 5.633
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.172 r_dihedral_angle_3_deg 17.892 r_dihedral_angle_4_deg 14.048 r_lrange_other 10.279 r_lrange_it 10.275 r_scangle_it 8.59 r_scangle_other 8.588 r_mcangle_it 6.351 r_mcangle_other 6.347 r_scbond_it 5.633 r_scbond_other 5.632 r_dihedral_angle_1_deg 4.981 r_mcbond_it 4.653 r_mcbond_other 4.651 r_angle_refined_deg 1.582 r_angle_other_deg 1.344 r_symmetry_nbd_refined 0.275 r_nbd_refined 0.213 r_nbd_other 0.2 r_xyhbond_nbd_refined 0.188 r_symmetry_nbd_other 0.173 r_symmetry_xyhbond_nbd_refined 0.158 r_nbtor_refined 0.152 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.073 r_symmetry_xyhbond_nbd_other 0.057 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3567 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing