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The Crystal Structure of HspBP1 from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XQR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20mM Tris-HCl (pH 8.0), 100mM NaCl, 1mM MgCl2
Crystal Properties Matthews coefficient Solvent content 2.36 47.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.931 α = 90 b = 89.411 β = 90 c = 84.68 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.18053 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 48.03 97.8 0.082 10.7 3.5 56950
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 96.8 0.627 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.2 48 56929 2854 97.625 0.202 0.1992 0.2067 0.2491 0.2519 34.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.76 0.038 -2.439 -1.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.358 r_dihedral_angle_6_deg 14.985 r_lrange_other 8.243 r_lrange_it 8.235 r_dihedral_angle_2_deg 7.03 r_scangle_it 6.632 r_scangle_other 6.631 r_dihedral_angle_1_deg 6.295 r_mcangle_it 4.648 r_mcangle_other 4.648
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.358 r_dihedral_angle_6_deg 14.985 r_lrange_other 8.243 r_lrange_it 8.235 r_dihedral_angle_2_deg 7.03 r_scangle_it 6.632 r_scangle_other 6.631 r_dihedral_angle_1_deg 6.295 r_mcangle_it 4.648 r_mcangle_other 4.648 r_scbond_it 4.072 r_scbond_other 4.071 r_mcbond_it 3.002 r_mcbond_other 3.001 r_angle_refined_deg 1.381 r_angle_other_deg 0.466 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.199 r_symmetry_xyhbond_nbd_refined 0.194 r_symmetry_nbd_refined 0.178 r_symmetry_nbd_other 0.176 r_nbtor_refined 0.166 r_nbd_other 0.164 r_ncsr_local_group_6 0.073 r_symmetry_nbtor_other 0.072 r_ncsr_local_group_3 0.072 r_ncsr_local_group_5 0.07 r_chiral_restr 0.069 r_ncsr_local_group_1 0.069 r_ncsr_local_group_2 0.067 r_ncsr_local_group_4 0.066 r_symmetry_xyhbond_nbd_other 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8240 Nucleic Acid Atoms Solvent Atoms 604 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing