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The Crystal Structure of HSP 90-alpha from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6HHR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 (Index-H6) 0.2M Sodium formate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.74 55.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.712 α = 90 b = 88.653 β = 90 c = 99.864 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2022-08-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.953698 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 36.28 100 0.061 17.3 8.8 51928
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.47 0.871 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.45 34.511 51928 2640 99.91 0.128 0.1264 0.1561 0.1799 25.439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.845 0.462 -3.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.355 r_dihedral_angle_4_deg 19.472 r_dihedral_angle_3_deg 10.437 r_dihedral_angle_1_deg 6.339 r_lrange_it 5.232 r_lrange_other 4.988 r_scangle_it 4.204 r_scangle_other 4.203 r_scbond_it 3.552 r_scbond_other 3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.355 r_dihedral_angle_4_deg 19.472 r_dihedral_angle_3_deg 10.437 r_dihedral_angle_1_deg 6.339 r_lrange_it 5.232 r_lrange_other 4.988 r_scangle_it 4.204 r_scangle_other 4.203 r_scbond_it 3.552 r_scbond_other 3.55 r_mcangle_other 3.528 r_mcangle_it 3.512 r_mcbond_it 2.882 r_mcbond_other 2.784 r_rigid_bond_restr 2.315 r_angle_refined_deg 1.504 r_angle_other_deg 1.466 r_nbd_refined 0.199 r_symmetry_xyhbond_nbd_refined 0.192 r_symmetry_nbd_other 0.176 r_nbtor_refined 0.165 r_nbd_other 0.16 r_symmetry_nbd_refined 0.14 r_xyhbond_nbd_refined 0.139 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1652 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing