☰ Navigation Tabs
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with Quisqualate and VU0424465
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7FD8
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 27.252 r_long_range_B_other 27.252 r_dihedral_angle_3_deg 17.671 r_scangle_other 15.329 r_mcangle_it 14.427 r_mcangle_other 14.426 r_scbond_it 8.83 r_scbond_other 8.829 r_mcbond_it 8.691 r_mcbond_other 8.69
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 27.252 r_long_range_B_other 27.252 r_dihedral_angle_3_deg 17.671 r_scangle_other 15.329 r_mcangle_it 14.427 r_mcangle_other 14.426 r_scbond_it 8.83 r_scbond_other 8.829 r_mcbond_it 8.691 r_mcbond_other 8.69 r_dihedral_angle_1_deg 5.226 r_dihedral_angle_2_deg 3.961 r_angle_refined_deg 0.853 r_angle_other_deg 0.322 r_chiral_restr 0.049 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and PAM VU0424465
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 551163 Reported Resolution (Å) 3.1 Resolution Method FSC 0.143 CUT-OFF Other Details The final refinement was Non-uniform Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (7FD8) Refinement Space RECIPROCAL Refinement Protocol OTHER Refinement Target Overall B Value 155.4 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 51.7
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification 59523 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Data were collected with Bio-quantum with 20 eV slit width.
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC MODEL FITTING UCSF Chimera 1.15 MODEL FITTING Coot 0.9.8.7 RECONSTRUCTION cryoSPARC MODEL REFINEMENT PHENIX 1.20.1-4487 MODEL REFINEMENT REFMAC 5.8.0411
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2928252