8WWX
Ube1L acts akin to a mitt, that mediates UbcH8 binding and orchestrates "E1-E2" interaction
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | N-HSQC | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
2 | 3D HNCACB | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
3 | 3D HN(CO)CA | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
4 | 3D 1H-15N NOESY | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
5 | 3D 1H-13C NOESY aliphatic | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
6 | 3D HCCH-TOCSY | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XEASY | |
molecular dynamics | X-PLOR NIH | |
torsion angle dynamics | Poky |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | XEASY | Bartels et al. | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | refinement | Poky | Manthey, Tonelli, Clos II, Rahimi, Markley and Lee | |
4 | peak picking | XEASY | Bartels et al. |