Ube1L acts akin to a mitt, that mediates UbcH8 binding and orchestrates "E1-E2" interaction
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | N-HSQC | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
| 2 | 3D HNCACB | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
| 3 | 3D HN(CO)CA | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
| 4 | 3D 1H-15N NOESY | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
| 5 | 3D 1H-13C NOESY aliphatic | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
| 6 | 3D HCCH-TOCSY | 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride | 90% H2O/10% D2O | 40 mM | 7.6 | 1 atm | 293 | Bruker AVANCE 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | XEASY | |
| molecular dynamics | X-PLOR NIH | |
| torsion angle dynamics | Poky | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 400 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | XEASY | Bartels et al. | |
| 2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 3 | refinement | Poky | Manthey, Tonelli, Clos II, Rahimi, Markley and Lee | |
| 4 | peak picking | XEASY | Bartels et al. | |














