8W2V | pdb_00008w2v

Solution Structure of the CD28 hinge used in chimeric antigen receptor (CAR) T-cells


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 700
22D CON0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 700
202D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 850
33D HNCACB0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
43D CBCA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
192D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
252D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm284Bruker AVANCE III 850
53D HNCO0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
263D HNCO0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm284Bruker AVANCE III 850
63D HN(CA)CO0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
273D HN(CA)CO0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm284Bruker AVANCE III 850
303D HNCO-COSY0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm284Bruker AVANCE III 850
103D HNCAN0.5 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
92D 1H-13C HSQC0.6 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide100% D2O70 mM6.51 atm298Bruker AVANCE III 850
282D 1H-13C HSQC0.6 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide100% D2O70 mM6.51 atm284Bruker AVANCE III 800
83D 1H-13C NOESY0.6 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide100% D2O70 mM6.51 atm298Bruker AVANCE III 850
293D 1H-13C NOESY0.6 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide100% D2O70 mM6.51 atm284Bruker AVANCE III 800
182D 1H-13C HSQC0.6 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide100% D2O70 mM6.51 atm298Bruker AVANCE III 700
73D 1H-13C CCH TOCSY0.6 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide100% D2O70 mM6.51 atm298Bruker AVANCE III 700
113D 1H-13C HCCH TOCSY0.6 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide100% D2O70 mM6.51 atm298Bruker AVANCE III 700
212D 1H-15N HSQC0.45 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 700
122D CACO0.45 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 700
133D CANCO0.45 mM [U-100% 13C; U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 700
172D 1H-15N HSQC0.4 mM [U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 900
232D 1H-15N HSQC0.4 mM [U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm284Bruker AVANCE III 800
143D 1H-15N NOESY0.4 mM [U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 900
243D 1H-15N NOESY0.4 mM [U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm284Bruker AVANCE III 800
152D 1H-15N HSQC0.28 mM [U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
163D HNHB0.28 mM [U-100% 15N] CD28 hinge, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 20 uM zinc sulphate, 1 mM pefabloc, 0.1 % sodium azide95% H2O/5% D2O70 mM6.51 atm298Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III700
2BrukerAVANCE III800
4BrukerAVANCE III850
3BrukerAVANCE III900
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number25
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3processingMddNMRV. Orekhov, V. Jaravine, M. Mayzel, K. Kazimierczuk
4peak pickingXEASYBartels et al.
5data analysisXEASYBartels et al.
6data analysisTALOS+Yang Shen, Frank Delaglio, Gabriel Cornilescu & Ad Bax
7refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore