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Binary structure of 14-3-3 sigma and ARAF phosphopeptide (pS214)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 PEG400, HEPES, CaCl2, glycerol
Crystal Properties Matthews coefficient Solvent content 2.64 53.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.518 α = 90 b = 112.806 β = 90 c = 62.713 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.967697 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 66.6 99.9 0.997 11.8 13.4 55423
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 0.536 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 66.6 52630 2772 99.88 0.1836 0.18229 0.20798 0.2177 RANDOM 13.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 -0.44 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.513 r_dihedral_angle_4_deg 14.247 r_dihedral_angle_3_deg 12.775 r_dihedral_angle_1_deg 5.209 r_long_range_B_refined 5.201 r_long_range_B_other 4.933 r_scangle_other 4.152 r_scbond_it 2.775 r_scbond_other 2.774 r_mcangle_other 2.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.513 r_dihedral_angle_4_deg 14.247 r_dihedral_angle_3_deg 12.775 r_dihedral_angle_1_deg 5.209 r_long_range_B_refined 5.201 r_long_range_B_other 4.933 r_scangle_other 4.152 r_scbond_it 2.775 r_scbond_other 2.774 r_mcangle_other 2.198 r_mcangle_it 2.197 r_angle_refined_deg 1.807 r_angle_other_deg 1.624 r_mcbond_it 1.396 r_mcbond_other 1.392 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1911 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 4
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing