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UIC-13-BIF-A4(Dab) extension of UIC-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8GK9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SLOW COOLING 298 Acetonitrile, water
Crystal Properties Matthews coefficient Solvent content 1.88 34.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.94 α = 90 b = 19.311 β = 98.76 c = 48.032 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.6199 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 22.59 98.63 0.997 8.98 6.5 7403 17.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.533 0.674
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.48 22.59 1.37 7403 1401 98.02 0.1543 0.1511 0.1488 0.2063 0.2025 19.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 29.6752 f_angle_d 1.5605 f_chiral_restr 0.053 f_bond_d 0.0101 f_plane_restr 0.0084
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 400 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 79
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing