8VLW | pdb_00008vlw

TolQ-TolR inner membrane protein complex from Acinetobacter baumannii


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.281
r_dihedral_angle_4_deg22.838
r_dihedral_angle_3_deg15.348
r_lrange_other11.514
r_lrange_it11.513
r_dihedral_angle_1_deg4.416
r_mcangle_it4.143
r_mcangle_other4.142
r_scangle_it3.931
r_scangle_other3.931
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.281
r_dihedral_angle_4_deg22.838
r_dihedral_angle_3_deg15.348
r_lrange_other11.514
r_lrange_it11.513
r_dihedral_angle_1_deg4.416
r_mcangle_it4.143
r_mcangle_other4.142
r_scangle_it3.931
r_scangle_other3.931
r_mcbond_it2.293
r_mcbond_other2.293
r_scbond_it2.097
r_scbond_other2.097
r_angle_other_deg1.764
r_angle_refined_deg1.693
r_xyhbond_nbd_refined0.231
r_nbd_refined0.216
r_ncsr_local_group_30.215
r_ncsr_local_group_80.214
r_ncsr_local_group_50.213
r_ncsr_local_group_20.204
r_ncsr_local_group_60.202
r_ncsr_local_group_100.202
r_ncsr_local_group_10.2
r_ncsr_local_group_70.195
r_ncsr_local_group_90.194
r_ncsr_local_group_40.193
r_symmetry_nbd_other0.192
r_nbtor_refined0.186
r_chiral_restr0.112
r_ext_dist_refined_d0.11
r_symmetry_xyhbond_nbd_other0.085
r_symmetry_nbtor_other0.084
r_bond_refined_d0.014
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d
Sample
TolQ-TolR inner membrane protein complex
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NamePROPANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles224768
Reported Resolution (Å)3.34
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)600
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION