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Hydrogen Peroxide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Sample Hydrogen Peroxide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 349552 Reported Resolution (Å) 2.31 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry T
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details Rounds of automatic real space refine in PHENIX with manual real space refine in coot
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) -800 Maximum Defocus (nm) 2800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 22500 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.3.1 IMAGE ACQUISITION SerialEM 4.0.25 MASKING cryoSPARC 4.3.1 CTF CORRECTION CTFFIND 4 MODEL FITTING UCSF ChimeraX 1.6 MODEL REFINEMENT PHENIX 1.20.1 MODEL REFINEMENT Coot 0.9.8.7 INITIAL EULER ASSIGNMENT cryoSPARC 4.3.1 FINAL EULER ASSIGNMENT cryoSPARC 4.3.1 CLASSIFICATION cryoSPARC 4.3.1 RECONSTRUCTION cryoSPARC 4.3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE