☰ Navigation Tabs
Esterase with a monomeric cooperative, hysteresis or allokairy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XUA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291.15 0.2 M Ammonium sulfate, 0.1 M Sodium cacodylate trihydrate pH 6.5 and, 30% w/v Polyethylene glycol 8,000
Crystal Properties Matthews coefficient Solvent content 2.35 47.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.076 α = 90 b = 105.891 β = 90 c = 145.371 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M vertical focusing mirror (side-bounce sagittal cylindrical mirror) 2021-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS SIRIUS BEAMLINE MANACA 0.9772 LNLS SIRIUS MANACA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 30 99.7 0.11 1 11.1 6.8 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.87 0.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 30 88267 4413 99.959 0.182 0.1797 0.189 0.2171 0.2235 33.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.215 0.256 -1.471
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.795 r_dihedral_angle_3_deg 15.326 r_dihedral_angle_2_deg 10.908 r_lrange_it 7.889 r_lrange_other 7.888 r_scangle_it 6.268 r_scangle_other 6.267 r_dihedral_angle_1_deg 6.134 r_scbond_it 4.208 r_scbond_other 4.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.795 r_dihedral_angle_3_deg 15.326 r_dihedral_angle_2_deg 10.908 r_lrange_it 7.889 r_lrange_other 7.888 r_scangle_it 6.268 r_scangle_other 6.267 r_dihedral_angle_1_deg 6.134 r_scbond_it 4.208 r_scbond_other 4.207 r_mcangle_it 3.953 r_mcangle_other 3.953 r_mcbond_it 2.967 r_mcbond_other 2.967 r_angle_refined_deg 1.484 r_angle_other_deg 0.49 r_symmetry_xyhbond_nbd_refined 0.292 r_nbd_refined 0.221 r_nbd_other 0.202 r_symmetry_nbd_refined 0.2 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.136 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.071 r_symmetry_xyhbond_nbd_other 0.045 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8190 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing