8UWU | pdb_00008uwu

EmrE structure in the proton-bound state (WT/L51I heterodimer)


SOLUTION NMR - SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
22D 1H-15N TROSY0.5 mM U-15N, U-2H, U-13C EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
132D 1H-15N TROSY0.8 mM [U-2H] EmrE, 0.5 mM U-15N, U-2H, U-13C EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
182D 1H-15N TROSY0.5 mM U-15N, U-2H, U-13C EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
192D 1H-15N TROSY0.8 mM [U-2H] EmrE, 0.5 mM U-15N, U-2H, U-13C EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
13D HNCA0.5 mM U-15N, U-2H, U-13C EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
143D HNCA0.8 mM [U-2H] EmrE, 0.5 mM U-15N, U-2H, U-13C EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
53D HNCO0.5 mM U-15N, U-2H, U-13C EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
153D HNCO0.8 mM [U-2H] EmrE, 0.5 mM U-15N, U-2H, U-13C EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
163D HN(CO)CA0.5 mM U-15N, U-2H, U-13C EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
173D HN(CO)CA0.8 mM [U-2H] EmrE, 0.5 mM U-15N, U-2H, U-13C EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 700
112D 1H-13C HSQC0.5 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
122D 1H-15N TROSY0.5 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
332D 1H-13C HSQC0.5 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
342D 1H-15N TROSY0.5 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
362D 1H-15N TROSY0.5 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE NEO 800
372D 1H-13C HSQC0.5 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
382D 1H-15N TROSY0.5 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.8 mM [U-2H] EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
392D 1H-13C HSQC0.5 mM [U-2H] EmrE, 0.3 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 21.5 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 65.1 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
402D 1H-15N TROSY0.5 mM [U-2H] EmrE, 0.3 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 21.5 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 65.1 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
432D 1H-15N TROSY0.8 mM [U-2H] EmrE, 0.5 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 35.8 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 108.3 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE NEO 800
422D 1H-13C HSQC0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
412D 1H-15N TROSY0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
452D 1H-13C HSQC0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
512D 1H-15N TROSY0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
502D 1H-13C HSQC0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
492D 1H-15N TROSY0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
482D 1H-13C HSQC0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE NEO 800
472D 1H-15N TROSY0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE NEO 800
462D 1H-13C HSQC0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
532D 1H-15N TROSY0.6 mM [U-2H] EmrE, 0.4 mM U-15N, U-2H, 13CH3-ILV EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE III 600
522D 1H-13C HSQC0.4 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.6 mM [U-2H] EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE NEO 800
552D 1H-15N TROSY0.4 mM U-15N, U-2H, 13CH3-ILV EmrE, 0.6 mM [U-2H] EmrE (L51I), 28.6 mM 2H-54 1,2-dimyristoyl-d54-sn-glycero-3-phosphocholine, 86.8 mM 2H-22 1,2-dihexanoyl-d22-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO490% H2O/10% D2O20 mM5.61 atm310Bruker AVANCE NEO 800
42D 15N/13C NCA6.7 mM U-15N, U-13C EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
242D 15N/13C NCA14.2 mM EmrE, 8.9 mM U-15N, U-13C EmrE (L51I), 511.1 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
102D 15N/13C NCO6.7 mM U-15N, U-13C EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
252D 15N/13C NCO14.2 mM EmrE, 8.9 mM U-15N, U-13C EmrE (L51I), 511.1 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
63D NCACX6.7 mM U-15N, U-13C EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
263D NCACX14.2 mM EmrE, 8.9 mM U-15N, U-13C EmrE (L51I), 511.1 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
73D NCOCX6.7 mM U-15N, U-13C EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
273D NCOCX14.2 mM EmrE, 8.9 mM U-15N, U-13C EmrE (L51I), 511.1 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
83D CANCOCX6.7 mM U-15N, U-13C EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
283D CANCOCX14.2 mM EmrE, 8.9 mM U-15N, U-13C EmrE (L51I), 511.1 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
93D CANCO6.7 mM U-15N, U-13C EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
293D CANCO14.2 mM EmrE, 8.9 mM U-15N, U-13C EmrE (L51I), 511.1 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
302D 13C/13C DARR6.7 mM U-15N, U-13C EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
313D CANCO14.2 mM EmrE, 8.9 mM U-15N, U-13C EmrE (L51I), 511.1 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
202D 13C/13C PDSD6.7 mM U-15N, 1,3-13C glycerol EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
212D 13C/13C PDSD12.5 mM EmrE, 7.8 mM U-15N, 1,3-13C glycerol EmrE (L51I), 512.2 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
222D 13C/13C PDSD6.7 mM U-15N, 2-13C glycerol EmrE, 10.7 mM EmrE (L51I), 513.3 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
232D 13C/13C PDSD12.5 mM EmrE, 7.8 mM U-15N, 2-13C glycerol EmrE (L51I), 512.2 mM 1,2-dimyristoyl-sn-glycero-3-phosphocholine, 20 mM sodium chloride, 150 mM Na2HPO4100% H2O20 mM51 atm273Agilent Direct Drive 600
32D 1H/15N PISEMA2 mM [U-15N]-amino acid EmrE, 321 mM 1,2-di-O-tetradecyl-sn-glycero-3-phosphocholine, 91.6 mM 1,2-dihexanoyl-sn-glycero-3-phosphocholine, 8 mM YbCl3, 20 mM sodium chloride, 80 mM HEPES100% H2O20 mM61 atm310Agilent Direct Drive 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
4BrukerAVANCE III700
2BrukerAVANCE NEO800
3AgilentDirect Drive600
NMR Refinement
MethodDetailsSoftware
simulated annealingThe lowest energy and least violated structures were refined using molecular dynamics simulations.X-PLOR NIH
molecular dynamicsThe 10 structures in best agreement with experimental distance measurements were selected from the MD simulations for deposition.GROMACS
NMR Ensemble Information
Conformer Selection Criteriaback calculated data agree with experimental NMR data
Conformers Calculated Total Number100000
Conformers Submitted Total Number10
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3refinementGROMACSLindahl, Abraham, Hess, van der Spoel
4peak pickingSparkyGoddard