☰ Navigation Tabs
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/up)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FTN
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.795 f_angle_d 0.622 f_chiral_restr 0.039 f_plane_restr 0.004 f_bond_d 0.002
Sample p97/VCP AAA+ ATPase R155H mutant/NSC819701
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 31543 Reported Resolution (Å) 3.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C6
Map-Model Fitting and Refinement Id 1 (5FTN) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 47.84
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 48077 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM 3.8 CTF CORRECTION cryoSPARC 2.14.2 MODEL FITTING Coot 0.9-pre INITIAL EULER ASSIGNMENT cryoSPARC 2.14.2 FINAL EULER ASSIGNMENT cryoSPARC 2.14.2 CLASSIFICATION cryoSPARC 2.14.2 RECONSTRUCTION cryoSPARC 2.14.2 MODEL REFINEMENT PHENIX 1.20.1-4487
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION