8UFX | pdb_00008ufx

CAII with SLC compound

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4CQ0

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		281	The protein was set up in MRC-2 plates (Molecular Dimensions, Sheffield, UK) using a Phoenix robot (Art Robbins Instruments, Sunnyvale, CA, USA) in 250 nL plus 250 nL drops with the protein at 4.2 mg/mL with the reservoir solutions being 2.5 to 2.8 M ammonium sulfate and 50 to 100 mM Tris buffer pH 8.1 to 8.9

Crystal Properties
Matthews coefficient	Solvent content
2.09	41.07

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.471	α = 90
b = 41.375	β = 104.379
c = 71.827	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2021-06-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	AUSTRALIAN SYNCHROTRON BEAMLINE MX2	0.953659	Australian Synchrotron	MX2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.21	41.4	97.8	0.102	0.043	0.996	8.7	6.5		71738

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.21	1.23	62.8		0.904	0.397	0.632	1.7	5.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.212	40.068	71716	3581	97.687	0.125	0.1243	0.1233	0.1474	0.1468	14.72

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.962		0.356	-0.367		1.013

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.795
r_lrange_it	12.958
r_dihedral_angle_3_deg	12.7
r_lrange_other	12.015
r_scangle_it	10.495
r_scangle_other	10.492
r_dihedral_angle_2_deg	9.232
r_scbond_it	7.527
r_scbond_other	7.524
r_mcangle_other	6.935
r_mcangle_it	6.923
r_dihedral_angle_1_deg	6.467
r_mcbond_it	4.91
r_mcbond_other	4.895
r_rigid_bond_restr	4.362
r_angle_refined_deg	1.761
r_angle_other_deg	0.613
r_symmetry_nbd_refined	0.337
r_symmetry_xyhbond_nbd_refined	0.245
r_nbd_other	0.226
r_nbd_refined	0.215
r_symmetry_nbd_other	0.202
r_xyhbond_nbd_refined	0.192
r_nbtor_refined	0.185
r_chiral_restr	0.103
r_symmetry_nbtor_other	0.087
r_metal_ion_refined	0.079
r_bond_refined_d	0.012
r_gen_planes_refined	0.01
r_symmetry_xyhbond_nbd_other	0.009
r_xyhbond_nbd_other	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2049
Nucleic Acid Atoms
Solvent Atoms	267
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing