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Unphosphorylated CaMKK2 in complex with CC-8977
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BQL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 2.0 M (NH4)2S04, 2 M NaCl, 0.1 NaCacodylate
Crystal Properties Matthews coefficient Solvent content 2.62 49.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.108 α = 90 b = 73.108 β = 90 c = 120.102 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 PIXEL DECTRIS PILATUS3 2M 2019-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.977410 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 62.45 99.9 1 21.4 20 52660
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 8.23 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 62.45 49899 2680 99.92 0.1689 0.16692 0.1671 0.20678 0.2079 RANDOM 25.645
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.13 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.915 r_dihedral_angle_4_deg 14.122 r_dihedral_angle_3_deg 12.88 r_long_range_B_refined 6.036 r_long_range_B_other 6.035 r_dihedral_angle_1_deg 5.89 r_scangle_other 4.089 r_scbond_it 2.946 r_scbond_other 2.945 r_mcangle_it 2.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.915 r_dihedral_angle_4_deg 14.122 r_dihedral_angle_3_deg 12.88 r_long_range_B_refined 6.036 r_long_range_B_other 6.035 r_dihedral_angle_1_deg 5.89 r_scangle_other 4.089 r_scbond_it 2.946 r_scbond_other 2.945 r_mcangle_it 2.469 r_mcangle_other 2.468 r_angle_refined_deg 2.119 r_mcbond_other 1.663 r_mcbond_it 1.662 r_angle_other_deg 0.971 r_chiral_restr 0.149 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2231 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing