8TT7 | pdb_00008tt7

NMR Assignments and Structure for the Dimeric Kinesin Neck Domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.75 mM [U-15N] Kinesin_neck	90% H2O/10% D2O	150 mM	6.1	1 atm	310	Varian INOVA 600
2	3D HNCACB	0.75 mM [U-13C; U-15N] Kinesin_neck	90% H2O/10% D2O	150 mM	6.1	1 atm	310	Varian INOVA 600
3	3D HNCA	0.75 mM [U-13C; U-15N] Kinesin_neck	90% H2O/10% D2O	150 mM	6.1	1 atm	310	Varian INOVA 600
4	3D HN(CO)CA	0.75 mM [U-13C; U-15N] Kinesin_neck	90% H2O/10% D2O	150 mM	6.1	1 atm	310	Varian INOVA 600
5	3D 1H-15N TOCSY	0.75 mM [U-15N] Kinesin_neck	90% H2O/10% D2O	150 mM	6.1	1 atm	310	Varian INOVA 600
6	3D 1H-15N NOESY	0.75 mM [U-15N] Kinesin_neck	90% H2O/10% D2O	150 mM	6.1	1 atm	310	Varian INOVA 600
7	2D 1H-13C HSQC	0.75 mM [U-13C; U-15N] Kinesin_neck	100% D2O	150 mM	6.1	1 atm	310	Bruker AVANCE NEO 600
8	3D HCACO	0.75 mM [U-13C; U-15N] Kinesin_neck	100% D2O	150 mM	6.1	1 atm	310	Bruker AVANCE 500
9	3D HCCH-TOCSY	0.75 mM [U-13C; U-15N] Kinesin_neck	100% D2O	150 mM	6.1	1 atm	310	Bruker AVANCE NEO 600
10	3D 1H-13C NOESY	0.75 mM [U-13C; U-15N] Kinesin_neck	100% D2O	150 mM	6.1	1 atm	310	Bruker AVANCE NEO 600
11	Hydrogen Exchange N-HSQC	0.75 mM [U-15N] Kinesin_neck	100% D2O	150 mM	6.1	1 atm	296	Varian INOVA 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Bruker	AVANCE NEO	600
3	Bruker	AVANCE	500

NMR Refinement
Method	Details	Software
simulated annealing	sa.inp script of X-Plor NIH tutorial followed by 3 cycles of refine.inp (from X-PLOR NIH). Structures with no violations selected for next round. multiple cycles of prot_sa_refine.inp from this site (https://nesgwiki.chem.buffalo.edu/index.php/Structure_Refinement_Using_XPLOR-NIH) until no violations. Structures have no differences the human eye can see but have better PDB quality bars.	X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
5	processing	In-house / custom		iNMR from MNova
6	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7	processing	Felix		Accelrys Software Inc.
2	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
3	chemical shift assignment	CcpNmr Analysis		CCPN
4	peak picking	CcpNmr Analysis		CCPN
8	collection	VnmrJ		Varian
9	collection	TopSpin		Bruker Biospin
10	data analysis	CcpNmr Analysis		CCPN