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HIV-CA Disulfide linked Hexamer bound to Quinazolin-4-one Scaffold inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8TOV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 PACT E4
Crystal Properties Matthews coefficient Solvent content 2.59 52.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.845 α = 87.012 b = 89.956 β = 78.394 c = 115.4 γ = 60.335
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS EIGER X 16M 2022-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 49.143 99.1 0.993 6.2 3.7 67407 67.996
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.97 0.255 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.9 49.143 67406 3400 99.033 0.202 0.2 0.2059 0.2475 0.2506 73.545
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.152 1.764 -0.017 0.009 -0.017 1.665
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.261 r_dihedral_angle_6_deg 13.866 r_lrange_it 13.715 r_lrange_other 13.715 r_scangle_it 11.074 r_scangle_other 11.074 r_mcangle_it 10.264 r_mcangle_other 10.263 r_dihedral_angle_2_deg 7.822 r_scbond_it 7.463
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.261 r_dihedral_angle_6_deg 13.866 r_lrange_it 13.715 r_lrange_other 13.715 r_scangle_it 11.074 r_scangle_other 11.074 r_mcangle_it 10.264 r_mcangle_other 10.263 r_dihedral_angle_2_deg 7.822 r_scbond_it 7.463 r_scbond_other 7.463 r_dihedral_angle_1_deg 7.285 r_mcbond_it 6.892 r_mcbond_other 6.891 r_angle_refined_deg 1.264 r_angle_other_deg 0.416 r_symmetry_nbd_refined 0.303 r_nbd_other 0.249 r_nbd_refined 0.227 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.178 r_symmetry_xyhbond_nbd_refined 0.128 r_symmetry_xyhbond_nbd_other 0.11 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.06 r_ncsr_local_group_21 0.048 r_ncsr_local_group_42 0.047 r_ncsr_local_group_63 0.045 r_ncsr_local_group_20 0.044 r_ncsr_local_group_35 0.043 r_ncsr_local_group_44 0.043 r_ncsr_local_group_46 0.043 r_ncsr_local_group_49 0.043 r_ncsr_local_group_60 0.043 r_ncsr_local_group_16 0.042 r_ncsr_local_group_34 0.042 r_ncsr_local_group_41 0.042 r_ncsr_local_group_62 0.042 r_ncsr_local_group_18 0.041 r_ncsr_local_group_45 0.041 r_ncsr_local_group_48 0.041 r_ncsr_local_group_51 0.041 r_ncsr_local_group_55 0.041 r_ncsr_local_group_40 0.04 r_ncsr_local_group_56 0.04 r_ncsr_local_group_6 0.039 r_ncsr_local_group_7 0.039 r_ncsr_local_group_11 0.039 r_ncsr_local_group_33 0.039 r_ncsr_local_group_38 0.039 r_ncsr_local_group_8 0.038 r_ncsr_local_group_26 0.038 r_ncsr_local_group_27 0.038 r_ncsr_local_group_29 0.038 r_ncsr_local_group_30 0.038 r_ncsr_local_group_37 0.038 r_ncsr_local_group_53 0.038 r_ncsr_local_group_65 0.038 r_ncsr_local_group_10 0.037 r_ncsr_local_group_17 0.037 r_ncsr_local_group_32 0.037 r_ncsr_local_group_47 0.037 r_ncsr_local_group_50 0.037 r_ncsr_local_group_14 0.036 r_ncsr_local_group_25 0.036 r_ncsr_local_group_52 0.036 r_ncsr_local_group_4 0.035 r_ncsr_local_group_9 0.035 r_ncsr_local_group_43 0.035 r_ncsr_local_group_66 0.035 r_ncsr_local_group_12 0.034 r_ncsr_local_group_64 0.034 r_ncsr_local_group_2 0.033 r_ncsr_local_group_15 0.033 r_ncsr_local_group_24 0.033 r_ncsr_local_group_36 0.033 r_ncsr_local_group_61 0.033 r_ncsr_local_group_3 0.032 r_ncsr_local_group_54 0.032 r_ncsr_local_group_1 0.031 r_ncsr_local_group_28 0.031 r_ncsr_local_group_58 0.031 r_ncsr_local_group_59 0.031 r_chiral_restr_other 0.03 r_ncsr_local_group_13 0.03 r_ncsr_local_group_19 0.03 r_ncsr_local_group_57 0.029 r_ncsr_local_group_5 0.028 r_ncsr_local_group_39 0.028 r_ncsr_local_group_22 0.026 r_ncsr_local_group_31 0.025 r_ncsr_local_group_23 0.023 r_bond_refined_d 0.007 r_bond_other_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19264 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 600
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing