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FARFAR-NMR ensemble of HIV-1 TAR with apical loop capturing ground and excited conformational states
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N E0_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 2 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N E0_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 3 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N EI22_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 800 4 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N EI22_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 800 5 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N EII3_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 600 6 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N EII3_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 600 17 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N EII13_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 16 2D 13C-1H S3CT HSQC 1.0 mM 13C, 15N EII13_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 15 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N E0_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 14 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N E0_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 13 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N EI22_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 800 12 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N EI22_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 800 11 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N EII3_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 600 10 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N EII3_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Agilent Varian 600 9 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N EII13_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 8 2D 13C-1H TROSY HSQC 1.0 mM 13C, 15N EII13_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 18 2D 1H-1H NOESY 1.0 mM 13C, 15N E0_wt_TAR RNA (29-MER) 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Agilent Varian 800 3 Agilent Varian 600
NMR Refinement Method Details Software simulated annealing FARFAR-NMR Rosetta
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 structure calculation Rosetta Shi et al