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Solution structure of the zinc finger repeat domain of BCL11A (ZnF456)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 1 mM dithiothreitol 90% H2O/10% D2O 163 mM 6.0 1 atm 298 Bruker AVANCE III HD 700 2 2D 1H-13C HSQC aliphatic 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 1 mM dithiothreitol 90% H2O/10% D2O 163 mM 6.0 1 atm 298 Bruker AVANCE III HD 700 3 2D 1H-13C HSQC aromatic 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 1 mM dithiothreitol 90% H2O/10% D2O 163 mM 6.0 1 atm 298 Bruker AVANCE III HD 700 4 3D 1H-13C NOESY aliphatic 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 1 mM dithiothreitol 90% H2O/10% D2O 163 mM 6.0 1 atm 298 Bruker AVANCE III HD 700 5 3D 1H-13C NOESY aromatic 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 1 mM dithiothreitol 90% H2O/10% D2O 163 mM 6.0 1 atm 298 Bruker AVANCE III HD 700 6 3D 1H-15N NOESY 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate, 1 mM dithiothreitol 90% H2O/10% D2O 163 mM 6.0 1 atm 298 Bruker AVANCE III HD 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 700
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.2 Bruker Biospin 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment CcpNmr Analysis 2.4.2 CCPN 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman