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HLA-DRB1*15:01 in complex with smith antigen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289.15 0.2M Disodium Malon
20% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.7 66.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.08 α = 90 b = 95.08 β = 90 c = 294.2 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315r 2022-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95373 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.12 46.9312243917 99.6 0.136 0.989 7.7 16 24942 66.3722339896
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.12 3.33 0.736 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.1262111426 46.9312243917 1.32617264364 24741 1222 99.6134798889 0.205258999018 0.202752776344 0.2057 0.253401102757 0.2569 55.20086933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.2787530638 f_angle_d 0.732369963085 f_chiral_restr 0.0461341473894 f_plane_restr 0.00487981933634 f_bond_d 0.0036595640182
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6224 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 28
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing