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Hydrophobic Interactions Drive the Tetrameric Assembly of the TRIM20 Coiled-Coil Domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8SDE one chain of TRIM29 structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 298 0.1M HEPES pH8.0, 35% 1,2-Propanediol, 10% PEG400
Crystal Properties Matthews coefficient Solvent content 2.38 48.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.6 α = 90 b = 38.83 β = 89.94 c = 164.3 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 9 95.7 0.033 0.999 13.6 2.9 18553
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 94.3 0.169 0.991 4 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.4 9 18548 838 95.094 0.261 0.259 0.259 0.294 0.2939 75.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.141 0.154 5.94 -11.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.54 r_dihedral_angle_3_deg 21.703 r_dihedral_angle_4_deg 17.439 r_lrange_it 16.773 r_scangle_it 15.12 r_mcangle_it 10.727 r_scbond_it 10.67 r_mcbond_it 7.763 r_dihedral_angle_1_deg 5.592 r_angle_refined_deg 1.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.54 r_dihedral_angle_3_deg 21.703 r_dihedral_angle_4_deg 17.439 r_lrange_it 16.773 r_scangle_it 15.12 r_mcangle_it 10.727 r_scbond_it 10.67 r_mcbond_it 7.763 r_dihedral_angle_1_deg 5.592 r_angle_refined_deg 1.702 r_nbtor_refined 0.312 r_symmetry_nbd_refined 0.293 r_nbd_refined 0.255 r_symmetry_xyhbond_nbd_refined 0.198 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.135 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3636 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing