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Structure of PI3KG in complex with MTX-531
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Unpublished structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 293 0.2 M Lithium Sulfate, 0.1 M TRIS-HCl pH 8.2, 15% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.34 47.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.934 α = 90 b = 67.452 β = 95.274 c = 106.983 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2022-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.965459 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.687 33.726 91.6 0.0717 0.0785 0.0316 0.998 13.96 6.1 23452
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.687 2.975 53.7 1.2206 1.3377 0.5414 0.547 1.34 6.05 2346
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 2.687 33.726 23452 1194 81.564 0.198 0.1951 0.198 0.2533 0.2605 98.219
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.476 -1.306 0.87 1.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.885 r_dihedral_angle_6_deg 13.013 r_lrange_it 6.767 r_lrange_other 6.766 r_dihedral_angle_1_deg 6.225 r_mcangle_it 4.367 r_mcangle_other 4.367 r_scangle_it 3.72 r_scangle_other 3.72 r_dihedral_angle_2_deg 3.283
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.885 r_dihedral_angle_6_deg 13.013 r_lrange_it 6.767 r_lrange_other 6.766 r_dihedral_angle_1_deg 6.225 r_mcangle_it 4.367 r_mcangle_other 4.367 r_scangle_it 3.72 r_scangle_other 3.72 r_dihedral_angle_2_deg 3.283 r_mcbond_it 2.538 r_mcbond_other 2.536 r_scbond_it 2.151 r_scbond_other 2.151 r_angle_refined_deg 0.812 r_angle_other_deg 0.283 r_nbd_refined 0.187 r_symmetry_nbd_other 0.175 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.137 r_nbd_other 0.116 r_symmetry_nbd_refined 0.106 r_symmetry_nbtor_other 0.074 r_symmetry_xyhbond_nbd_refined 0.038 r_chiral_restr 0.037 r_symmetry_xyhbond_nbd_other 0.007 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6708 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 56
Software Software Software Name Purpose autoPROC data processing XDS data reduction Aimless data scaling STARANISO data scaling REFMAC refinement REFMAC phasing