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Restriction on Ku Inward Translocation Caps Telomere Ends
ELECTRON MICROSCOPY
Starting Model(s)
Initial Refinement Model(s)
Type
Source
Accession Code
Details
in silico model
Other
Refinement
RMS Deviations
Key
Refinement Restraint Deviation
f_dihedral_angle_d
16.445
f_angle_d
0.523
f_chiral_restr
0.039
f_plane_restr
0.004
f_bond_d
0.002
Sample
Ternary Complex of Ku Rap1 and DNA
Sample Components
ATP-dependent DNA helicase II and DNA-binding protein RAP1
Double stranded DNA
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
436644
Reported Resolution (Å)
3.11
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Initial Fitting of the model in the cryo-EM map was achieved using ChimeraX and this structure served as starting point for MDFF refinement (Flexible ...
Initial Fitting of the model in the cryo-EM map was achieved using ChimeraX and this structure served as starting point for MDFF refinement (Flexible fitting) using NAMD 2.14.