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NavMs in complex with riluzole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SX5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 35%vPEG 300
100mM HEPES
100mM NaCl
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.17 α = 90 b = 109.17 β = 90 c = 208.925 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 12M 2020-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I23 2.755 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 96.944 100 0.979 2.63 16 34745 43.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 100 0.972 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.15 96.757 34736 1749 99.997 0.23 0.229 0.2447 0.2425 67.979
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.061 0.061 -0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.39 r_lrange_it 14.682 r_dihedral_angle_6_deg 13.046 r_scangle_it 12.593 r_mcangle_it 11.066 r_dihedral_angle_2_deg 9.272 r_scbond_it 9.22 r_mcbond_it 8.096 r_dihedral_angle_1_deg 5.888 r_angle_refined_deg 2.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.39 r_lrange_it 14.682 r_dihedral_angle_6_deg 13.046 r_scangle_it 12.593 r_mcangle_it 11.066 r_dihedral_angle_2_deg 9.272 r_scbond_it 9.22 r_mcbond_it 8.096 r_dihedral_angle_1_deg 5.888 r_angle_refined_deg 2.178 r_nbtor_refined 0.314 r_nbd_refined 0.244 r_symmetry_xyhbond_nbd_refined 0.237 r_symmetry_nbd_refined 0.189 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.146 r_bond_refined_d 0.011 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2022 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing