☰ Navigation Tabs
CryoEM structure of Apo form of catalytic domain of human HMG-CoA reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HWK
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.713 r_dihedral_angle_2_deg 17.038 r_dihedral_angle_6_deg 15.354 r_lrange_it 9.907 r_lrange_other 9.907 r_scangle_it 7.328 r_scangle_other 7.326 r_dihedral_angle_1_deg 5.281 r_scbond_it 4.497 r_scbond_other 4.495
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.713 r_dihedral_angle_2_deg 17.038 r_dihedral_angle_6_deg 15.354 r_lrange_it 9.907 r_lrange_other 9.907 r_scangle_it 7.328 r_scangle_other 7.326 r_dihedral_angle_1_deg 5.281 r_scbond_it 4.497 r_scbond_other 4.495 r_mcangle_it 4.464 r_mcangle_other 4.463 r_mcbond_it 3.086 r_mcbond_other 3.086 r_angle_refined_deg 1.12 r_angle_other_deg 0.396 r_nbd_refined 0.227 r_symmetry_nbd_other 0.213 r_symmetry_nbd_refined 0.203 r_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.182 r_symmetry_xyhbond_nbd_refined 0.156 r_nbd_other 0.142 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.052 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_bond_other_d
Sample human HMGCoA catalytic domain reductase
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 1066707 Reported Resolution (Å) 2.06 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry D2
Map-Model Fitting and Refinement Id 1 (1hwk) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 54.8
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Topaz 0.2.5 IMAGE ACQUISITION EPU 3.8 CTF CORRECTION RELION 5 MODEL FITTING Coot INITIAL EULER ASSIGNMENT RELION 5 FINAL EULER ASSIGNMENT RELION 5 CLASSIFICATION RELION 5 RECONSTRUCTION RELION 5 MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 5498554