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Unbound murine diabetogenic 4.1 TCR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7Z50
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 0.1 M sodium phosphate (NaH2PO4) pH 6.5, 14% w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 3.29 62.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.986 α = 90 b = 151.131 β = 92.8 c = 135.55 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 6M 2023-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 151.13 99.8 0.18 0.213 0.114 0.993 6.2 3.5 90351
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.15 3.2 99.8 1.385 1.639 0.87 0.446 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 135.39 85986 4340 86.27 0.21889 0.21649 0.2301 0.26619 0.282 RANDOM 65.606
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 42.72 -5.47 0.51 -43.23
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 20.07 r_dihedral_angle_3_deg 17.201 r_mcangle_it 13.994 r_scbond_it 10.762 r_mcbond_it 9.338 r_dihedral_angle_2_deg 8.787 r_dihedral_angle_1_deg 7.278 r_angle_refined_deg 1.818 r_chiral_restr 0.133 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 20.07 r_dihedral_angle_3_deg 17.201 r_mcangle_it 13.994 r_scbond_it 10.762 r_mcbond_it 9.338 r_dihedral_angle_2_deg 8.787 r_dihedral_angle_1_deg 7.278 r_angle_refined_deg 1.818 r_chiral_restr 0.133 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25675 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing